my full list is in the comments page on it, feel free to add on there
but i can't add some html tags for my top five so i will do it here
1. Schizophrenia
from Year Punk Broke, the quintessential version
http://www.youtube.com/watch?v=Uz_bCyirfn8
2. The Diamond Sea
from Letterman, the most compressed bombastic version i have heard of it
http://www.youtube.com/watch?v=_lb1bPQSNWk
3. Kool Thing
live in 2002
http://www.youtube.com/watch?v=4l6hpV4NrR0
4. Mote
live in 2005
http://www.youtube.com/watch?v=enOQyECrQMY
5. Incinerate
Letterman again
http://www.youtube.com/watch?v=ytADXZFzwH8